PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016891
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 460aa    MW: 51854.8 Da    PI: 6.3812
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016891genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS248.62.4e-76944572374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl....fsevsPilkfsh 95 
                   +lLl++Ae v  gd   a++++ + + l+sp+g+p+qRl++y+ +AL+ r+ r   e+  +++  +++e++  ++++  ++    f+   P+  +++
  Lus10016891  94 AQLLLQAAEKVGRGD--SAETFIDKCEMLSSPSGTPIQRLVFYYSRALRVRIGR---EIGGIVTKDQSPEEDLYKVVMTPSFrfveFHRRIPFSPVAQ 186
                  689******999987..5889*********************************...55555555555555533333333333368************ PP

         GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                  ++  q I+e ve+++ +H+iDf+i +G QW  L+qaLasR+ +   +l+iT+v+      k+ +e+ g+ L +fA+++++p +f+v+++++l++l+ +
  Lus10016891 187 FAGIQSIVEHVEKSQNIHVIDFGIRNGHQWTILMQALASRKrRRVKHLKITAVAT---LGKHLIEQRGNMLLSFAQAMNLPCSFHVVMVHDLTELRHD 281
                  ****************************************966677*********...67999*********************************** PP

         GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                  +++++p+Ea+aV   + + +l  e+v+    +d v+++++sl P v+vv+e e+++ns+ F++rf+e+l + sa fd++e  + r++e+r+  E +l+
  Lus10016891 282 HFKIEPEEAVAVLAEYIINTLT-EPVER---IDLVIRAIRSLYPIVMVVTEMEVNMNSPVFVNRFVESLFFASAYFDCFEDCMDRDEEARVYGESMLF 375
                  **************99777775.44443...66****************************************************************9 PP

         GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  g+  + vva e +    r+ ++  Wr  ++++G+ + +ls++   qa l+++kv+ +   +   +++sl+ gWk+ p++sv+aW+
  Lus10016891 376 GEGSKVVVAEERSI---RNMKADVWRIYFKRVGMVEEALSQSSLYQAGLVVKKVPcWSQCTFGTDEKSLIVGWKGTPILSVTAWK 457
                  99988888877766...888899********************************9999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.89267436IPR005202Transcription factor GRAS
PfamPF035148.2E-7494457IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MANKDIMIPP PLCVDGFSTD DLDVYDITSF RNLLAQRTSS PVVTNVIPPR NAALSVEELV  60
RIAASKFILS HSNDSSFHLS TTLSDSESDS VELAQLLLQA AEKVGRGDSA ETFIDKCEML  120
SSPSGTPIQR LVFYYSRALR VRIGREIGGI VTKDQSPEED LYKVVMTPSF RFVEFHRRIP  180
FSPVAQFAGI QSIVEHVEKS QNIHVIDFGI RNGHQWTILM QALASRKRRR VKHLKITAVA  240
TLGKHLIEQR GNMLLSFAQA MNLPCSFHVV MVHDLTELRH DHFKIEPEEA VAVLAEYIIN  300
TLTEPVERID LVIRAIRSLY PIVMVVTEME VNMNSPVFVN RFVESLFFAS AYFDCFEDCM  360
DRDEEARVYG ESMLFGEGSK VVVAEERSIR NMKADVWRIY FKRVGMVEEA LSQSSLYQAG  420
LVVKKVPCWS QCTFGTDEKS LIVGWKGTPI LSVTAWKFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-34974574375GRAS family transcription factor containing p
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225229RKRRR
2226230KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316032.11e-137hypothetical protein POPTR_0010s15350g
TrEMBLB9HWZ71e-137B9HWZ7_POPTR; Uncharacterized protein
STRINGPOPTR_0010s15350.11e-136(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-34RGA-like 2